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ABOUT THIS RECORD

ID: MNEST001511
species: Manihot esculenta
miRNA family: MIRf729
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGAGCTCTGTTGGTCTCTCT

miRNA*
 GGTTTCTTACAGAGTTTATTG

mismatches: 5
bulges: 0
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pre-miRNA
 AAGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA

dot-bracket secondary structure
).((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).


SIMILARITIES
miRBase ptc-MIR394b: 1.0E-38

PMRD ptc-miRf10096-akr: 1.0E-29

microPC miR394: 2.0E-37		UniProt no hits

RFAM 4MIR394: 7.0E-16		most similar mature miRNAs

Identical with: miR394 from microPC (MNEST046238)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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