ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIRf729
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAGCTCTGTTGGTCTCTCT miRNA* GGTTTCTTACAGAGTTTATTG mismatches: 5 bulges: 0 |
pre-miRNA
AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA
dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA
dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).
SIMILARITIES| miRBase ptc-MIR394b: 1e-38 PMRD ptc-miRf10096-akr: 1e-29 microPC miR394: 2e-37 | UniProt no hits RFAM MIR394: 7e-16 | most similar mature miRNAs |
Identical with: miR394 from microPC (MNEST046238) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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