miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001512
species: Manihot esculenta
miRNA family: miR394a-3p
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTGTTGGTCTCTCTTTGTAAA

miRNA*
 AACAAAGGGTTTCTTACAGAG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA

dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).


SIMILARITIES
miRBase ptc-MIR394b: 1e-38

PMRD ptc-miRf10096-akr: 1e-29

microPC miR394: 2e-37		UniProt no hits

RFAM MIR394: 7e-16		most similar mature miRNAs

Identical with: miR394 from microPC (MNEST046238)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;