ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR394
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGGCATACTGCCAACTG miRNA* TTGGCATTCTGTCCACCTCC mismatches: 3 bulges: 1 |
pre-miRNA
AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA
dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGCTTTCATGTGGGTTTAACAAAGGGTTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGG
AGGTGGGCATACTGCCAACTGAGCTCTGTTGGTCTCTCTTTGTAAAACTCTCGTGATGTA
dot-bracket secondary structure
.((..(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((.((.((.((...((............)).)))).))))
)))))))))...)))))).)))))))))).))...)))))))).)))))).))))).)).
SIMILARITIES| miRBase ptc-MIR394b: 1e-38 PMRD ptc-miRf10096-akr: 1e-29 microPC miR394: 2e-37 | UniProt no hits RFAM MIR394: 7e-16 | most similar mature miRNAs |
Identical with: miR394 from microPC (MNEST046238) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
