ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCC miRNA* GCGATTCTCCTTTGGCAGG mismatches: 1 bulges: 0 |
pre-miRNA
TACTCCTAGAGGGTAGTGAAGAATATCAGTGCGATTCTCCTTTGGCAGGAATTTGGTATTCTGCTGTTAACCAGTCTGCTAAACTGATAGCTGCCAAAGG
AGAATTGCCCTGTTATTCAACTACACTACTAATTACACAA
dot-bracket secondary structure
......(((.(((((((...(((((.(((.((((((((((((((((((...(((((((....((((.....)))).))))))).......))))))))))
)))))))).))).))))).))))).)).))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTCCTAGAGGGTAGTGAAGAATATCAGTGCGATTCTCCTTTGGCAGGAATTTGGTATTCTGCTGTTAACCAGTCTGCTAAACTGATAGCTGCCAAAGG
AGAATTGCCCTGTTATTCAACTACACTACTAATTACACAA
dot-bracket secondary structure
......(((.(((((((...(((((.(((.((((((((((((((((((...(((((((....((((.....)))).))))))).......))))))))))
)))))))).))).))))).))))).)).))).........
SIMILARITIES| miRBase vvi-MIR399a: 0.0000000005 PMRD vvi-miR399a: 0.0000000005 microPC miR399: 2e-43 | UniProt no hits RFAM mir-399: 0.0000000005 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST046746) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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