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ABOUT THIS RECORD

ID: MNEST001532
species: Manihot esculenta
miRNA family: MIRf1205
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAGAGCATGGATGGAGCTA

miRNA*
 GCTCCACCCATGCACTGCCTC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GCAAGGCAAGTGAATGGGATTTGGGTTTTGGGGAAGCGGGGAAAGAAAGAGGCTGACAAAGACTGGGAACAGGCAGAGCATGGATGGAGCTATTAATGGA
AATATCTGTTTTGGCTCCACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCCTCCTTTTCTCCCTCCTCACTTTTTTTCGTTTTCACAATTTCGTGCTT
AT

dot-bracket secondary structure
...(((((.(((((.((((...((((...(((((...((((((((..((.(((((...(((...(((((.((((((.((((((.((((((((..((((((
....)))))).)))))))).)))))).)))))).)))))...))).))))).))..)))))))).)))))))))..))))...))))).......)))))
..


SIMILARITIES
miRBase ptc-MIR408: 5e-29

PMRD ptc-miR408: 5e-29

microPC miR408: 1e-23		UniProt no hits

RFAM MIR408: 3e-31		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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