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ABOUT THIS RECORD

ID: MNEST001534
species: Manihot esculenta
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGGGAACAGGCAGAGCATGG

miRNA*
ATGCACTGCCTCTTCCCTGGC

mismatches: 4
bulges: 0

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pre-miRNA
GGGTAAAGAAAGAGACGGACAAAGACTGGGAACAGGCAGAGCATGGGTGGAACTATTAACACAAGTATCTGTTTTAGCACCACCCATGCACTGCCTCTTC
CCTGGC
TTGCGGGTCTTCTTTTTCTGCT


dot-bracket secondary structure
.(((..(((((((((.((((.(((...(((((.((((((.((((((((((..(((..((((........)))).)))..)))))))))).)))))).)))
))...)
))....))))))))))))))))



SIMILARITIES
miRBase ptc-MIR408: 7e-21

PMRD ptc-miR408: 7e-21

microPC miR408: 5e-19
UniProt no hits

RFAM MIR408: 6e-22
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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