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ABOUT THIS RECORD

ID: MNEST001535
species: Manihot esculenta
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCA

miRNA*
CGTCACCATCAAGATTCACA

mismatches: 3
bulges: 0

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pre-miRNA
GAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGG
TGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGAC


dot-bracket secondary structure
......((((.....((((((((((.((.((((((.((.(((((((((((.((.......(((((..((((((...((((.........))))....)))
))).))))).(((..((((((...))))))..))))).))))))))))).)).)))))).)).)))).)))))).....))))....



SIMILARITIES
miRBase bdi-MIR172a: 0.0000000006

PMRD mes-miR172: 4e-79

microPC miR172: 2e-68
UniProt no hits

RFAM mir-172: 0.000000003
most similar mature miRNAs

Identical with: mes-miR172 from PMRD (MNEST048693)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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