ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
AAGTGGAGCTCCTTGAAGTCCAATAGAGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCT
TCTTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACA
dot-bracket secondary structure
..((((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((....((((((.((((((.((.....(((((....))))
)..)))))))).))))))....)))).))))).)))))..)))))).....)).))))))))..)))))))..)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTGGAGCTCCTTGAAGTCCAATAGAGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCT
TCTTGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCTACA
dot-bracket secondary structure
..((((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((....((((((.((((((.((.....(((((....))))
)..)))))))).))))))....)))).))))).)))))..)))))).....)).))))))))..)))))))..)))))))))))).
SIMILARITIES| miRBase rco-MIR159: 4e-51 PMRD vvi-miR159c: 3e-33 microPC miR159: 5e-100 | UniProt no hits RFAM MIR159: 8e-50 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST046712) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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