ABOUT THIS RECORDspecies: Mesembryanthemum crystallinum
miRNA family: MIRf133
source: miRNEST
Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCGGTGGAGGAGAGAGAAA miRNA* TCTCTCTCTTCCATTGTCTCT mismatches: 4 bulges: 0 |
pre-miRNA
TGGCTTTCTCTCTCTTCCATTGTCTCTGCTCTGCTCGGTCAGTAAGGTGATGGCGGCGATTCAGATGAGAGCGGTGGTGGCCGAGGGTGGCTACCAGCCT
CGATCGTCATCGGTTCGAGTGATCGATGTCGATGAGGAGATGGCGGCGCAGAGGAATAAGAGGCGGCGGAGGAGGGTGGTACCGGTGGAGGAGAGAGAAA
ATGGTGGTG
dot-bracket secondary structure
..((((((((((((((((((((...(((((((.(((.((((......)))).((.((.((((...((...((..(((((((((....)))))))))(((.
...((.(((((((.((((....))))..))))))).))...))).)).))...)))).....)).)).))).)))))))...))))))))))))))))).
..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGCTTTCTCTCTCTTCCATTGTCTCTGCTCTGCTCGGTCAGTAAGGTGATGGCGGCGATTCAGATGAGAGCGGTGGTGGCCGAGGGTGGCTACCAGCCT
CGATCGTCATCGGTTCGAGTGATCGATGTCGATGAGGAGATGGCGGCGCAGAGGAATAAGAGGCGGCGGAGGAGGGTGGTACCGGTGGAGGAGAGAGAAA
ATGGTGGTG
dot-bracket secondary structure
..((((((((((((((((((((...(((((((.(((.((((......)))).((.((.((((...((...((..(((((((((....)))))))))(((.
...((.(((((((.((((....))))..))))))).))...))).)).))...)))).....)).)).))).)))))))...))))))))))))))))).
..)))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
