miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001546
species: Mesembryanthemum crystallinum
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCGGTTCAATAAAGCTGTGG

miRNA*
 ACAGCTTTCTTGAACTGCATC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ATCAATACATATGGTCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTT
TTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAA
AGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTC

dot-bracket secondary structure
...........(((.(((.((((((((.((((((((((((.((((((((((....(((.((.((((((((((((((...(((((.....(((((((.(((
(((.((((((((((.......)))))))))).)))))).....)))))))..))))).)))))))))))))).))........))).)))))))))).))
)))))))))).)))))))).))).)))..........


SIMILARITIES
miRBase lja-MIR396: 0.000000000000003

PMRD lja-miR396: 0.000000000000003

microPC miR396: 4e-33		UniProt no hits

RFAM MIR396: 0.000000000004		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;