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ABOUT THIS RECORD

ID: MNEST001549
species: Mesembryanthemum crystallinum
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCTCAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGAAGA

mismatches: 1
bulges: 1
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pre-miRNA
 AATTATCAATACATATGGTCCTCTTTGTATTCTTCCTCAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAA
TTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAA
TAAAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCAAGA

dot-bracket secondary structure
)..............(((.(((.(((((((.(((((((((((((.((((((((((....(((.((.((((((((((((((...(((((.....(((((((.
((((((.((((((((((.......)))))))))).)))))).....)))))))..))))).)))))))))))))).))........))).))))))))))
.))))))).))))))))))))).))).)))..............


SIMILARITIES
miRBase lja-MIR396: 9.0E-13

PMRD lja-miR396: 9.0E-13

microPC miR396: 4.0E-33		UniProt no hits

RFAM 6MIR396: 6.0E-11		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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