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ABOUT THIS RECORD
ID:
MNEST001549
species:
Mesembryanthemum crystallinum
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Mesembryanthemum crystallinum
Mesembryanthemum
Aizoaceae
Caryophyllales
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCTCAGCTTTCTTGAACTG
miRNA*
GTTCAATAAAGCTGTGGGAAGA
mismatches:
1
bulges:
1
View larger
pre-miRNA
ATTATCAATACATATGGTCCTCTTTGTATTC
TTCCTCAGCTTTCTTGAACTG
CATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAA
TTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCG
GTTCAA
TAAAGCTGTGGGAAGA
TACAAATAGGCCCAACAAAAATTCAAGA
dot-bracket secondary structure
..............(((.(((.(((((((.(
((((((((((((.((((((((
((....(((.((.((((((((((((((...(((((.....(((((((.
((((((.((((((((((.......)))))))))).)))))).....)))))))..))))).)))))))))))))).))........))).))))
))))))
.))))))).)))))))
)))))).))).)))..............
SIMILARITIES
miRBase
lja-MIR396
:
0.0000000000009
PMRD
lja-miR396
:
0.0000000000009
microPC
miR396
:
4e-33
UniProt
no hits
RFAM
MIR396: 0.00000000006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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