ABOUT THIS RECORDspecies: Mesostigma viride
miRNA family: MIRf1173
source: miRNEST
Taxonomy by NCBI:
Mesostigma viride Mesostigma Mesostigmataceae Mesostigmatales Mesostigmatophyceae Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTGATTTTTGGGGCACGA miRNA* GCTTCAAGGGTCTCCGAAT mismatches: 3 bulges: 2 |
pre-miRNA
TGTTGAATTGGAAAGCGAGATCGCTTCAAGGGTCTCCGAATAGCCAACTGATGCTGTTACAGTACCTCACCGTGGAGGTGAGGGTCGCAAGGATTAAGTA
TGGGATCGATGTCCCGATAGGCCTTGCCCTATTCTTAGCATAGGGTAGCTTTCTCATTCTTGTACCATGTATTATCTGTTGATTTTTGGGGCACGAGGCT
TGCTATCCATGAGGC
dot-bracket secondary structure
........((((.((((((.((((((((((((((..((.((((...((((.........)))).(((((((.....)))))))...(((.((..((((.(
((((((((......))).((((..((((((((.......)))))))))))))))))).))))..)).))).)))).))..))))))))))))..))..))
)))).))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGTTGAATTGGAAAGCGAGATCGCTTCAAGGGTCTCCGAATAGCCAACTGATGCTGTTACAGTACCTCACCGTGGAGGTGAGGGTCGCAAGGATTAAGTA
TGGGATCGATGTCCCGATAGGCCTTGCCCTATTCTTAGCATAGGGTAGCTTTCTCATTCTTGTACCATGTATTATCTGTTGATTTTTGGGGCACGAGGCT
TGCTATCCATGAGGC
dot-bracket secondary structure
........((((.((((((.((((((((((((((..((.((((...((((.........)))).(((((((.....)))))))...(((.((..((((.(
((((((((......))).((((..((((((((.......)))))))))))))))))).))))..)).))).)))).))..))))))))))))..))..))
)))).))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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