ABOUT THIS RECORDspecies: Mimulus guttatus
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Mimulus guttatus Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCGCCTTC miRNA* GGATGCATATGCCTATGCAGA mismatches: 5 bulges: 0 |
pre-miRNA
TCTCTCTCTCACTCAAGATGTTGCTTTGATCTGCATTTGCACCTGCGCCTTCTTCTCTCTTAAATTCATCAAGAATTTGATGATTAATATGATGAATAAA
AGAGGAATTTAAGGGGATGCATATGCCTATGCAGATGAATGCCACTTTTGGAAATAAAAATCA
dot-bracket secondary structure
............((((((.((.((.((.((((((((..(((..((((.((((((.((((((..((((((((..((((....))))....))))))))..)
))))).....)))))).))))..)))..)))))))).)).)).))))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTCTCTCTCACTCAAGATGTTGCTTTGATCTGCATTTGCACCTGCGCCTTCTTCTCTCTTAAATTCATCAAGAATTTGATGATTAATATGATGAATAAA
AGAGGAATTTAAGGGGATGCATATGCCTATGCAGATGAATGCCACTTTTGGAAATAAAAATCA
dot-bracket secondary structure
............((((((.((.((.((.((((((((..(((..((((.((((((.((((((..((((((((..((((....))))....))))))))..)
))))).....)))))).))))..)))..)))))))).)).)).))))))))............
SIMILARITIES| miRBase tcc-MIR530b: 0.000002 PMRD ptc-miRf11025-akr: 0.00003 microPC no hits | UniProt no hits RFAM MIR530: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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