ABOUT THIS RECORDspecies: Mimulus lewisii
miRNA family: miR171g
source: miRNEST
Taxonomy by NCBI:
Mimulus lewisii Mimulus Phrymaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATTGAGTTGGCTCATCTCTC miRNA* TGACGACGAGCTGAGTCAGGAGTG mismatches: 4 bulges: 2 |
pre-miRNA
AACACCCTGTGGTCCGGCACTGTGGCATTGGTTGACGACGAGCTGAGTCAGGAGTGGAAGGATCGCATAGGGGTAAATCGGGTATTTCTCAGGGATCTGA
ACAGTTTCTTGGCCGCCGATTCTCGCATTGAGTTGGCTCATCTCTCCATCGGTGATGGACTCACTCTCTGCAGGC
dot-bracket secondary structure
.....(((((((((((.(((((......(((..((.((.(((((((.((((..(((..((((((((.((((((....((((((...........))))))
.....))))))...).)))))))))).)))).))))))).)))).))).))))).))))))........))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AACACCCTGTGGTCCGGCACTGTGGCATTGGTTGACGACGAGCTGAGTCAGGAGTGGAAGGATCGCATAGGGGTAAATCGGGTATTTCTCAGGGATCTGA
ACAGTTTCTTGGCCGCCGATTCTCGCATTGAGTTGGCTCATCTCTCCATCGGTGATGGACTCACTCTCTGCAGGC
dot-bracket secondary structure
.....(((((((((((.(((((......(((..((.((.(((((((.((((..(((..((((((((.((((((....((((((...........))))))
.....))))))...).)))))))))).)))).))))))).)))).))).))))).))))))........))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q43161|CAMT_STELP: 0.00000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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