ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIRf439
source: miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAAGCTGGTCCAGACACCA miRNA* GTGCGGGCAAGCTGGTATG mismatches: 4 bulges: 2 |
pre-miRNA
GAATTAGTCGAGGTGCGGGCAAGCTGGTATGTAGGGGTAAAGTCTGCGTATACACTATCCTTCCTAGACCCCACTTGTGGGATTACATTGGGTTTGTTGT
TGTTGCTGATGTTGTTGCGTGCAAGCTGGTCCAGACACCACCATTATCC
dot-bracket secondary structure
((.....))..((((.((((.((((.((((((((...(((.(((.(((...(((.((.(((.....((.((((....)))).)).....)))..)).)))
...))).))).))))))))))).)))).))))...))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAATTAGTCGAGGTGCGGGCAAGCTGGTATGTAGGGGTAAAGTCTGCGTATACACTATCCTTCCTAGACCCCACTTGTGGGATTACATTGGGTTTGTTGT
TGTTGCTGATGTTGTTGCGTGCAAGCTGGTCCAGACACCACCATTATCC
dot-bracket secondary structure
((.....))..((((.((((.((((.((((((((...(((.(((.(((...(((.((.(((.....((.((((....)))).)).....)))..)).)))
...))).))).))))))))))).)))).))))...))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
