miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001598
species: Nicotiana benthamiana
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACATCATCATCATCCTCTTCT

miRNA*
 ATGAGGATGAGGATGATGAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CTAGTAAATCCACATCATCATCATCCTCTTCTTCGCTTTTCTCTGTTCTTCCTCCGCCCAAAACCACTCCTTTGTCTTCGTCAGATCCTAAACCTAAAAA
AAGGGTTGTTCAGTTCAAGCCTCCTGCCAACCCTTTTTCTGTCAAGTCCAATAATAGCGTAGATGAAGATGAGGATGAGGATGATGAGGGTGAGAAG

dot-bracket secondary structure
.......((((.(((((((.((((((((.((((((....(((.((((.((.....................(((.(((...((((.............((
((((((((..(((..........))).))))))))))))))..)))..))).)).)))).))))))))).)))))))).))))))).))))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-598: 0.0007		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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