ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIRf592
source: miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAAGTTGTCCCTGGCTACA miRNA* CAGCCAGGGATGACTTGCCGA mismatches: 1 bulges: 0 |
pre-miRNA
AGAGAGTGGATTGCAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTCCCTGGCTA
CATTTCTCATGC
dot-bracket secondary structure
.(((((.....((.(((((((((((((((((((((((.(((((.((...((((......)))).)).)))))...))).)))))))))))))))))))).
)).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAGAGTGGATTGCAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTCCCTGGCTA
CATTTCTCATGC
dot-bracket secondary structure
.(((((.....((.(((((((((((((((((((((((.(((((.((...((((......)))).)).)))))...))).)))))))))))))))))))).
)).)))))....
SIMILARITIES| miRBase vvi-MIR169s: 0.0000003 PMRD vvi-miR169s: 0.0000003 microPC miR169: 1e-43 | UniProt no hits RFAM MIR169_2: 0.000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
