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ABOUT THIS RECORD

ID: MNEST001607
species: Nicotiana benthamiana
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCGCCCCTG

miRNA*
 GGGGCAACCTGAGATCACATA

mismatches: 2
bulges: 0
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pre-miRNA
 GGTGAAAGTGTTCAACAGGGGCAACCTGAGATCACATATTGTCATTTTTCTTTAGTTGTTGAGTCTGGTTCAATATCTCACTATGTGTTCTCAGGTCGCC
CCTGTCGAATTATTTTTCACCGAATAAGATGGT

dot-bracket secondary structure
((((((((.((((.((((((((.((((((((.((((((.((............((.(((((((.....))))))).)))).)))))).)))))))).)))
))))).))))...))))))))............


SIMILARITIES
miRBase bdi-MIR398c: 0.000006

PMRD vvi-miR398c: 0.00003

microPC miR398: 3e-45		UniProt no hits

RFAM MIR398: 0.0005		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045095)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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