ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIRf890
source: miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGTGAGATTTGGAGAGTGG miRNA* ACTCTTATTCTTGTTGCTG mismatches: 2 bulges: 2 |
pre-miRNA
GTGTGTTTTGTTTCATATGCTGCAGTGAGATTTGGAGAGTGGCTGTAAGATGAAAATGAGGGGCTATTCATTCTTTACTGCTACTCTTATTCTTGTTGCT
GTTTCCATTTTTCTTAGCT
dot-bracket secondary structure
((((((........)))))).(((((((((....(((((((((.(((((.....((((((......)))))).))))).)))))))))..))))))))).
...................
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTGTGTTTTGTTTCATATGCTGCAGTGAGATTTGGAGAGTGGCTGTAAGATGAAAATGAGGGGCTATTCATTCTTTACTGCTACTCTTATTCTTGTTGCT
GTTTCCATTTTTCTTAGCT
dot-bracket secondary structure
((((((........)))))).(((((((((....(((((((((.(((((.....((((((......)))))).))))).)))))))))..))))))))).
...................
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
