ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: miR3436
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGAAAAAATCATTGTTGGG miRNA* AGACAATGGTTTCACTCTTG mismatches: 3 bulges: 1 |
pre-miRNA
GACGTTTGTGTGTACTTCAGAGGAGAAAAAATCATTGTTGGGACCAAAAGCCAGGAAACTGTGGGAGAATTAAAACAAAAGCTCAGTTGTATCCTCAAAA
TAGCACCCCGATATCAAATTATAGTTTTCAGAGGAATTTGGCTAGACAATGGTTTCACTCTTGAAGACTATC
dot-bracket secondary structure
.((......))...(((((..((((...(((((((((((.((.(((((..((.(((((((((((................(((...(((......)))..
.)))..............)))))))))))...))..))))))).)))))))))))..)))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GACGTTTGTGTGTACTTCAGAGGAGAAAAAATCATTGTTGGGACCAAAAGCCAGGAAACTGTGGGAGAATTAAAACAAAAGCTCAGTTGTATCCTCAAAA
TAGCACCCCGATATCAAATTATAGTTTTCAGAGGAATTTGGCTAGACAATGGTTTCACTCTTGAAGACTATC
dot-bracket secondary structure
.((......))...(((((..((((...(((((((((((.((.(((((..((.(((((((((((................(((...(((......)))..
.)))..............)))))))))))...))..))))))).)))))))))))..)))))))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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