ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf599
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGGATTACAGGTGTGAGC miRNA* TCATTTTTGTATTTTTAGTAG mismatches: 2 bulges: 0 |
pre-miRNA
CACCACATGTGGCTCATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGCTGACCAGGCGGGTCTTGAACTCTTGACCTCGTGATCCCCCTGCCTCAG
CCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACTCC
dot-bracket secondary structure
).......(((((((((.((((((.((((((((.....((((.........(((((.((((.(((((.(((..........))).))))).))))..))))
))))).....)))))))).)))))).)))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACCACATGTGGCTCATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGCTGACCAGGCGGGTCTTGAACTCTTGACCTCGTGATCCCCCTGCCTCAG
CCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACTCC
dot-bracket secondary structure
).......(((((((((.((((((.((((((((.....((((.........(((((.((((.(((((.(((..........))).))))).))))..))))
))))).....)))))))).)))))).)))))))))......
SIMILARITIES| miRBase hsa-mir-3929: 5.0E-13 PMRD ptc-miRf10804-akr: 3.0E-14 microPC no hits | UniProt sp|Q96N38|ZN714_HUMAN: 2.0E-12 RFAM PMetazoa_SRP: 5.0E-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
