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ABOUT THIS RECORD
ID:
MNEST001629
species:
Nicotiana tabacum
miRNA family:
MIR1530
source:
miRNEST
Taxonomy by NCBI:
Nicotiana tabacum
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGTCACATAAATTAAAATAG
miRNA*
GTTCTAATTTCTTTGACACTT
mismatches:
5
bulges:
0
View larger
pre-miRNA
TATACACCTTCT
GTTCTAATTTCTTTGACACTT
TTTGTTAGTTTGTTCCAAAAAGGACGGACATATTTGATATTTGAGAATACTTTACCTTAACCTTAAT
AGAATTTTTTATGACATCACATATATTATGGAATATATACGACCATAATTTTCAAATATCTTATAGTCGTACAAATATTATAGCATGTTTAATACCACAA
CTTTCAAATTCTTCTTTTCCTTAAAAACAAAAT
ATGTCACATAAATTAAAATAG
AGGAAGTAT
dot-bracket secondary structure
.((((..(((((
(((.((((((...(((((..(
((((((.((((((((......)))))))).(((.((((.((.((((((.((................
)).))))))...)).)))).)))..(((.(((((((.((((((.((((............)))).)))))).((((((......)))))).)))......
................)))).))).))))))).
.)))))...)))))).)))))
)))..))))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record