ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 2 bulges: 0 |
pre-miRNA
ATGCATTTATCGCGGCGGTCTCTCATTCGCTTGGTGCAGGTCGGGACCTGCCTCGCCGGCGACAATGACGTCAGCTGACGGTGACGGTGGCGTATCGATAG
ATATACATGTTGTTTATGACGAAATTTTGGTCCCGCCTTGCATCAACTGAATCGGAGACTGCGGTGAATTTTAA
dot-bracket secondary structure
)........((((.(((((((((.(((((.((((((((((.(((((((.((((((((((((((......))).))...)))))).)))...(((((....)
))))..((.(((((...))))).))...))))))).)))))))))).))))).))))))))).)))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGCATTTATCGCGGCGGTCTCTCATTCGCTTGGTGCAGGTCGGGACCTGCCTCGCCGGCGACAATGACGTCAGCTGACGGTGACGGTGGCGTATCGATAG
ATATACATGTTGTTTATGACGAAATTTTGGTCCCGCCTTGCATCAACTGAATCGGAGACTGCGGTGAATTTTAA
dot-bracket secondary structure
)........((((.(((((((((.(((((.((((((((((.(((((((.((((((((((((((......))).))...)))))).)))...(((((....)
))))..((.(((((...))))).))...))))))).)))))))))).))))).))))))))).)))).......
SIMILARITIES| miRBase tcc-MIR168: 9.0E-12 PMRD stu-miR168: 4.0E-14 microPC miR168: 1.0E-66 | UniProt no hits RFAM 8MIR168: 4.0E-11 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST046016) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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