ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 2 bulges: 0 |
pre-miRNA
TGCATTTATCGCGGCGGTCTCTCATTCGCTTGGTGCAGGTCGGGACCTGCCTCGCCGGCGACAATGACGTCAGCTGACGGTGACGGTGGCGTATCGATAG
ATATACATGTTGTTTATGACGAAATTTTGGTCCCGCCTTGCATCAACTGAATCGGAGACTGCGGTGAATTTTAA
dot-bracket secondary structure
........((((.(((((((((.(((((.((((((((((.(((((((.((((((((((((((......))).))...)))))).)))...(((((....)
))))..((.(((((...))))).))...))))))).)))))))))).))))).))))))))).)))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCATTTATCGCGGCGGTCTCTCATTCGCTTGGTGCAGGTCGGGACCTGCCTCGCCGGCGACAATGACGTCAGCTGACGGTGACGGTGGCGTATCGATAG
ATATACATGTTGTTTATGACGAAATTTTGGTCCCGCCTTGCATCAACTGAATCGGAGACTGCGGTGAATTTTAA
dot-bracket secondary structure
........((((.(((((((((.(((((.((((((((((.(((((((.((((((((((((((......))).))...)))))).)))...(((((....)
))))..((.(((((...))))).))...))))))).)))))))))).))))).))))))))).)))).......
SIMILARITIES| miRBase tcc-MIR168: 0.000000000009 PMRD stu-miR168: 0.00000000000004 microPC miR168: 1e-66 | UniProt no hits RFAM MIR168: 0.00000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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