ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf257
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGATGATGCTGCAGCGGCCG miRNA* GTTGCTCGGCAGTAGGAGGG mismatches: 3 bulges: 1 |
pre-miRNA
AGGAGTCGTAGTTGGTTGCTCGGCAGTAGGAGGGTATTCGGATACAGAGTGGTAGTGGTAGAGAATCCTGATGATGCTGCAGCGGCCGCATGAGGGGA
dot-bracket secondary structure
)....((((...(((((((((((((.((..(((((.(((...(((.........)))...))).)))))..)).))))).)))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGAGTCGTAGTTGGTTGCTCGGCAGTAGGAGGGTATTCGGATACAGAGTGGTAGTGGTAGAGAATCCTGATGATGCTGCAGCGGCCGCATGAGGGGA
dot-bracket secondary structure
)....((((...(((((((((((((.((..(((((.(((...(((.........)))...))).)))))..)).))))).)))))))).)))).....
SIMILARITIES| miRBase bdi-MIR172d: 5.0E-6 PMRD sof-miR172a: 7.0E-8 microPC miR172: 2.0E-27 | UniProt no hits RFAM 2mir-172: 8.0E-5 | most similar mature miRNAs |
Identical with: miR172 from microPC (MNEST045330) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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