ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf257
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGATGATGCTGCAGCGGCCG miRNA* GTTGCTCGGCAGTAGGAGGG mismatches: 3 bulges: 1 |
pre-miRNA
GGAGTCGTAGTTGGTTGCTCGGCAGTAGGAGGGTATTCGGATACAGAGTGGTAGTGGTAGAGAATCCTGATGATGCTGCAGCGGCCGCATGAGGGGA
dot-bracket secondary structure
....((((...(((((((((((((.((..(((((.(((...(((.........)))...))).)))))..)).))))).)))))))).)))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGAGTCGTAGTTGGTTGCTCGGCAGTAGGAGGGTATTCGGATACAGAGTGGTAGTGGTAGAGAATCCTGATGATGCTGCAGCGGCCGCATGAGGGGA
dot-bracket secondary structure
....((((...(((((((((((((.((..(((((.(((...(((.........)))...))).)))))..)).))))).)))))))).)))).....
SIMILARITIES| miRBase bdi-MIR172d: 0.000005 PMRD sof-miR172a: 0.00000007 microPC miR172: 2e-27 | UniProt no hits RFAM mir-172: 0.00008 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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