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ABOUT THIS RECORD
ID:
MNEST001636
species:
Nicotiana tabacum
miRNA family:
MIR172
source:
miRNEST
Taxonomy by NCBI:
Nicotiana tabacum
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCCTGATGATGCTGCAG
miRNA*
CGGCAGTAGGAGGGTATTCG
mismatches:
4
bulges:
1
View larger
pre-miRNA
GTGTTGGAAAGTCGAGTTTGTGGGGAGTCGTAGTTGGTTGCT
CGGCAGTAGGAGGGTATTCG
GATACAGAGTGGTAGTGGTAG
AGAATCCTGATGATGCT
GCAG
CGGCCGCATGAGGGGATCCTCTAGAGTCGACGGCATGCC
dot-bracket secondary structure
..........(((((.((((.(((((.((.((..((((((((
(((((.((..(((((.(((.
..(((.........)))...)
)).)))))..)).))))
).))
))))))..))...)).))))))))).)))))........
SIMILARITIES
miRBase
bdi-MIR172d
:
0.000007
PMRD
sof-miR172a
:
0.0000001
microPC
miR172
:
2e-27
UniProt
no hits
RFAM
mir-172: 0.0001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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