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ABOUT THIS RECORD

ID: MNEST001637
species: Nicotiana tabacum
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGCGCCAATATCACT

miRNA*
 CGATGTTGGTGAGGTTCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 GTAGTTATTATATTAAGAGAAGCGATGTTGGTGAGGTTCAATCCGAAGACGAGTTTACGTTTTGTTTTCGTAAAGAACGATCTCAGATTGAGCCGCGCCA
ATATCACTTCCTTTTTATCAATTAAGC

dot-bracket secondary structure
.(((((...(((..(((.((((.((((((((((.(((((((((.((.((((((.......)))))).((((.....))))..)).))))))))).)))))
))))).)))))))..))).)))))...


SIMILARITIES
miRBase sly-MIR171d: 2e-33

PMRD sly-miR171d: 2e-33

microPC miR171: 1e-44		UniProt no hits

RFAM MIR171_1: 4e-32		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046459)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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