ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTGGTTGGTTAAGGACACTGGAGGCAGCGGTTCATCGATCTGTTCCCTGAAAGGCGATAAACAAAATATAGCAACAGGAATCGGTCGATAAACCTCTG
CATCCAGCGCTTAACCCCCTTCTCT
dot-bracket secondary structure
)....((..(((((((....(((((.((((.((((.(((((((.(((((.((....((.(((.......))).))..))))))).))))))).)))).)))
).)))))..))))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTGGTTGGTTAAGGACACTGGAGGCAGCGGTTCATCGATCTGTTCCCTGAAAGGCGATAAACAAAATATAGCAACAGGAATCGGTCGATAAACCTCTG
CATCCAGCGCTTAACCCCCTTCTCT
dot-bracket secondary structure
)....((..(((((((....(((((.((((.((((.(((((((.(((((.((....((.(((.......))).))..))))))).))))))).)))).)))
).)))))..))))))).))......
SIMILARITIES| miRBase mtr-MIR162: 7.0E-12 PMRD sly-miR162: 3.0E-11 microPC miR162: 1.0E-10 | UniProt no hits RFAM 2MIR162_2: 7.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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