ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTCCAAGAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CGATGAAGTCCTAGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTAGCTGAATTTTGATCTCTCTTTAGGCAATTGTGGATAGTTTTAATTTGAGAGA
TGAGATTTAAAGCTCTGAAAGTCCAAGAAAGCTGTGGGAAAATATGGCAATCTTAGGAC
dot-bracket secondary structure
)......((((((((((((.((((((((((((((((((.((((..((.((((.((.(((.(((((((...((((.(((...))).))))......))))))
).))).))..))))..)))))).)))))))))))))))))).)))))).....))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGATGAAGTCCTAGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTAGCTGAATTTTGATCTCTCTTTAGGCAATTGTGGATAGTTTTAATTTGAGAGA
TGAGATTTAAAGCTCTGAAAGTCCAAGAAAGCTGTGGGAAAATATGGCAATCTTAGGAC
dot-bracket secondary structure
)......((((((((((((.((((((((((((((((((.((((..((.((((.((.(((.(((((((...((((.(((...))).))))......))))))
).))).))..))))..)))))).)))))))))))))))))).)))))).....))))))
SIMILARITIES| miRBase gma-MIR396b: 4.0E-14 PMRD gma-miR396b: 4.0E-14 microPC miR396: 1.0E-13 | UniProt no hits RFAM 6MIR396: 1.0E-11 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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