ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGCATGCCA miRNA* GCGTGCGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
AAAGAAGTTTTGTGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCAT
ACCACATTA
dot-bracket secondary structure
).....((..(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).))))
)..))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAGAAGTTTTGTGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCAT
ACCACATTA
dot-bracket secondary structure
).....((..(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).))))
)..))....
SIMILARITIES| miRBase vvi-MIR160c: 5.0E-9 PMRD vvi-miR160c: 5.0E-9 microPC miR160: 9.0E-45 | UniProt no hits RFAM 0mir-160: 4.0E-7 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045945) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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