ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGCATGCCA miRNA* GCGTGCGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
AAGAAGTTTTGTGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCAT
ACCACATTA
dot-bracket secondary structure
.....((..(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).))))
)..))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAGAAGTTTTGTGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCAT
ACCACATTA
dot-bracket secondary structure
.....((..(((((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).))))
)..))....
SIMILARITIES| miRBase vvi-MIR160c: 0.000000005 PMRD vvi-miR160c: 0.000000005 microPC miR160: 9e-45 | UniProt no hits RFAM mir-160: 0.0000004 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045945) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
