ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCCGTCATCA mismatches: 2 bulges: 1 |
pre-miRNA
TGAGATTGTTGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAA
GCATCTCAATTCATTTGTGCTCTCTATGCTTCCGTCATCACCTT
dot-bracket secondary structure
).....((.((((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))..(.....)..((((.......
...))))...))))))))))))))))).)))).)))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAGATTGTTGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAA
GCATCTCAATTCATTTGTGCTCTCTATGCTTCCGTCATCACCTT
dot-bracket secondary structure
).....((.((((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))..(.....)..((((.......
...))))...))))))))))))))))).)))).)))).))....
SIMILARITIES| miRBase sly-MIR156a: 8.0E-15 PMRD nta-miR157: 3.0E-70 microPC miR157: 1.0E-69 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045877), miR157 from microPC , nta-miR157 from PMRD , miR157 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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