ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf58
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCATGCGATCTCTTCGGAT miRNA* CCAAAGGGATCGCATTGATCCT mismatches: 2 bulges: 1 |
pre-miRNA
TGGTGGAGTATTCCAAAGGGATCGCATTGATCCTGTGTCCCAATTTGAGTCCAATGGGATCATGCGATCTCTTCGGATTTCTCCAT
dot-bracket secondary structure
).((((((...(((.((((((((((((.((((((((.................)))))))))))))))))))).)))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGTGGAGTATTCCAAAGGGATCGCATTGATCCTGTGTCCCAATTTGAGTCCAATGGGATCATGCGATCTCTTCGGATTTCTCCAT
dot-bracket secondary structure
).((((((...(((.((((((((((((.((((((((.................)))))))))))))))))))).)))...))))))
SIMILARITIES| miRBase ptc-MIR393d: 3.0E-7 PMRD ptc-miR393d: 3.0E-7 microPC miR393: 9.0E-32 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR393 from microPC (MNEST045319) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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