ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf58
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCATGCGATCTCTTCGGAT miRNA* CCAAAGGGATCGCATTGATCCT mismatches: 2 bulges: 1 |
pre-miRNA
GGTGGAGTATTCCAAAGGGATCGCATTGATCCTGTGTCCCAATTTGAGTCCAATGGGATCATGCGATCTCTTCGGATTTCTCCAT
dot-bracket secondary structure
.((((((...(((.((((((((((((.((((((((.................)))))))))))))))))))).)))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGGAGTATTCCAAAGGGATCGCATTGATCCTGTGTCCCAATTTGAGTCCAATGGGATCATGCGATCTCTTCGGATTTCTCCAT
dot-bracket secondary structure
.((((((...(((.((((((((((((.((((((((.................)))))))))))))))))))).)))...))))))
SIMILARITIES| miRBase ptc-MIR393d: 0.0000003 PMRD ptc-miR393d: 0.0000003 microPC miR393: 9e-32 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR393 from microPC (MNEST045319) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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