ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAGTGCAGCGTTGATGA miRNA* ATCTACGCTGCACTCAATCA mismatches: 1 bulges: 0 |
pre-miRNA
GAAGGAGTAGCTATGCAGAGTGCTTAGAAATATCATTGAGTGCAGCGTTGATGAAAATGTCGAATTTCTGCAGATACTGATGCTGCATTATTATTCATTT
CAGACAGTTTTCATCTACGCTGCACTCAATCATGTTTCAGCGCTCTGAAGAAATAGTTAGTTT
dot-bracket secondary structure
....((.(((((((.(((((((((..(((((((.((((((((((((((.(((((((((((((((....(((((.........)))))...........))
).)))).)))))))).)))))))))))))).)))))))))))))))).....))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGGAGTAGCTATGCAGAGTGCTTAGAAATATCATTGAGTGCAGCGTTGATGAAAATGTCGAATTTCTGCAGATACTGATGCTGCATTATTATTCATTT
CAGACAGTTTTCATCTACGCTGCACTCAATCATGTTTCAGCGCTCTGAAGAAATAGTTAGTTT
dot-bracket secondary structure
....((.(((((((.(((((((((..(((((((.((((((((((((((.(((((((((((((((....(((((.........)))))...........))
).)))).)))))))).)))))))))))))).)))))))))))))))).....))))))).)).
SIMILARITIES| miRBase sly-MIR397: 0.00000003 PMRD sly-miR397: 0.00000003 microPC miR397: 0.000002 | UniProt no hits RFAM MIR397: 0.0000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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