ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGGAAATGTGTGGGAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGAATATTATACATGAGCTTAATAACAATATTGCTTGTTTTAACCATC
CATAGCGCTATCCATCCTGAGTTTCATAGCTTCTTCATGCTCTCTTTTT
dot-bracket secondary structure
...(((...((((((.((((.((((.((((((((((.(((((((((.(((((((....(((...((((((.((.......))..))))))..))).))))
))).))))))))).)))))))))).)))).))))))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGGAAATGTGTGGGAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGAATATTATACATGAGCTTAATAACAATATTGCTTGTTTTAACCATC
CATAGCGCTATCCATCCTGAGTTTCATAGCTTCTTCATGCTCTCTTTTT
dot-bracket secondary structure
...(((...((((((.((((.((((.((((((((((.(((((((((.(((((((....(((...((((((.((.......))..))))))..))).))))
))).))))))))).)))))))))).)))).))))))))))..)))....
SIMILARITIES| miRBase gma-MIR390a: 0.000000000000002 PMRD ghr-miR390c: 0.0000000000005 microPC miR390: 0.000000002 | UniProt no hits RFAM MIR390: 0.00000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
