ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf968
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTAAAGCTCAGGAGGGATA miRNA* TCCATCCTGAGTTTCATAGCT mismatches: 2 bulges: 0 |
pre-miRNA
TTGTGGAAATGTGTGGGAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGAATATTATACATGAGCTTAATAACAATATTGCTTGTTTTAACCATC
CATAGCGCTATCCATCCTGAGTTTCATAGCTTCTTCATGCTCTCTTTTT
dot-bracket secondary structure
)...(((...((((((.((((.((((.((((((((((.(((((((((.(((((((....(((...((((((.((.......))..))))))..))).))))
))).))))))))).)))))))))).)))).))))))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGTGGAAATGTGTGGGAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATGGATGAATATTATACATGAGCTTAATAACAATATTGCTTGTTTTAACCATC
CATAGCGCTATCCATCCTGAGTTTCATAGCTTCTTCATGCTCTCTTTTT
dot-bracket secondary structure
)...(((...((((((.((((.((((.((((((((((.(((((((((.(((((((....(((...((((((.((.......))..))))))..))).))))
))).))))))))).)))))))))).)))).))))))))))..)))....
SIMILARITIES| miRBase gma-MIR390a: 2.0E-15 PMRD ghr-miR390c: 5.0E-13 microPC miR390: 2.0E-9 | UniProt no hits RFAM 0MIR390: 4.0E-14 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
