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ABOUT THIS RECORD

ID: MNEST001659
species: Nicotiana tabacum
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGATAGAGAGCATG

miRNA*
 CCTTTTTGCTTCATCAAA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 ATTTGTTTAGAAACCAGAAATTGACAGAAGATAGAGAGCATGTGACAGCTTGAACTTTAGAAGGATTCGCTATGCATCAGTCCACAAGTAGGCGATTCCC
TCCCATTTGCTGATGCTGCTTCAGCTTGAACTTTCTCCATGAGAATCATATGAAGTTTTACGGCGGCGCTCATTATGACCTGCCAAACGCCTCCGGCAAC
TCCTTTTTGCTTCATCAAACTCTGGCAACTGACGAAA

dot-bracket secondary structure
.((((((......(((((..((((..((((.(((((((...((..((((.((.......((.(((.(((((.(((............)))))))).))).
)).))...)))).((..((((((...(((...(((((...))))))))..))))))..)).(((((...(((...))).)))))....(((...))).))
..))))))))))).))))..))))).....)))))).


SIMILARITIES
miRBase gma-MIR156g: 0.0002

PMRD sly-miR157b: 1e-30

microPC miR157: 0.0008		UniProt sp|Q9S758|SPL5_ARATH: 0.00000004

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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