ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCTTGTATGCCA miRNA* GCATGCTAGGAGCCATGCATC mismatches: 2 bulges: 0 |
pre-miRNA
ATATAGATACATGCCTGGCTCCTTGTATGCCATTTGCATTGTTCCATCTATAATTGATGGCCTTTTCAGATGGCATGCTAGGAGCCATGCATCCATGTTG
A
dot-bracket secondary structure
.....((((.((((.((((((((.((((((((((((.......(((((.......)))))......)))))))))))).)))))))).))))...)))).
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATATAGATACATGCCTGGCTCCTTGTATGCCATTTGCATTGTTCCATCTATAATTGATGGCCTTTTCAGATGGCATGCTAGGAGCCATGCATCCATGTTG
A
dot-bracket secondary structure
.....((((.((((.((((((((.((((((((((((.......(((((.......)))))......)))))))))))).)))))))).))))...)))).
.
SIMILARITIES| miRBase vvi-MIR160d: 0.00000002 PMRD vvi-miR160d: 0.00000002 microPC miR160: 0.000005 | UniProt no hits RFAM mir-160: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
