ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf541
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGCCCATATATCAGTGGCAC miRNA* GTCATTGACATGTGGGCCATA mismatches: 4 bulges: 0 |
pre-miRNA
GACTCTTCTGACTTTGTGCAGTTTATAGTTAGGTCATTGACATGTGGGCCATATCAAAGTAGGGCCCATATATCAGTGGCACAACTGTAGACTGCACAAA
GTCAGGGATCT
dot-bracket secondary structure
.....(((((((((((((((((((((((((..((((((((.(((((((((.(((....))).))))))))).))))))))..))))))))))))))))))
)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACTCTTCTGACTTTGTGCAGTTTATAGTTAGGTCATTGACATGTGGGCCATATCAAAGTAGGGCCCATATATCAGTGGCACAACTGTAGACTGCACAAA
GTCAGGGATCT
dot-bracket secondary structure
.....(((((((((((((((((((((((((..((((((((.(((((((((.(((....))).))))))))).))))))))..))))))))))))))))))
)))))))....
SIMILARITIES| miRBase osa-MIR1847: 0.00000009 PMRD osa-miRf10186-akr: 0.000000006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
