ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGAACATGGGAACACATG mismatches: 3 bulges: 1 |
pre-miRNA
ATGAACAATGGTGCACCCCAAAGGAGTGAACATGGGAACACATGTGCATTTTGGTATTTTTGTTTTGGCTAAAATCTAAATGCACTTGTGTTCTCAGGTC
ACCCCTTTTGGGTCACCTTGCTTCTT
dot-bracket secondary structure
..((((((.((((.((((.(((((.((((...((((((((((.((((((((.(((.((...((....)).)).))).)))))))).))))))))))..))
)).))))).))))))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGAACAATGGTGCACCCCAAAGGAGTGAACATGGGAACACATGTGCATTTTGGTATTTTTGTTTTGGCTAAAATCTAAATGCACTTGTGTTCTCAGGTC
ACCCCTTTTGGGTCACCTTGCTTCTT
dot-bracket secondary structure
..((((((.((((.((((.(((((.((((...((((((((((.((((((((.(((.((...((....)).)).))).)))))))).))))))))))..))
)).))))).))))))))))).)))..
SIMILARITIES| miRBase gra-MIR398: 0.0000004 PMRD aqc-miR398a: 0.000002 microPC miR398: 0.000006 | UniProt no hits RFAM MIR398: 0.0000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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