ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf175
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGAAGGAGATGGAGGACGA miRNA* GTCGATCTGTCTTTGTTGGCAA mismatches: 4 bulges: 1 |
pre-miRNA
ATGAAGAAGAGGTTGAAGGAGATGGAGGACGAATCTGCTGCTCTACTTGAAATGCAAGCCAAAGTTGAGAAAGAAATGGGTTCCGTTCAAGACCCTGCTG
CTGCTGCTGCAACTCAAGCGAACAGGGAAGAAGTGGATGGTCGATCTGTCTTTGTTGGCAATGTGGATT
dot-bracket secondary structure
...........(((((.(((((((((.(((..(((((((.((((.(((((..((((.((...(((..((..((....(((((........)))))..)).
)))))))))))..))))).....))))....))))))).)))..))))))))).)))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGAAGAAGAGGTTGAAGGAGATGGAGGACGAATCTGCTGCTCTACTTGAAATGCAAGCCAAAGTTGAGAAAGAAATGGGTTCCGTTCAAGACCCTGCTG
CTGCTGCTGCAACTCAAGCGAACAGGGAAGAAGTGGATGGTCGATCTGTCTTTGTTGGCAATGTGGATT
dot-bracket secondary structure
...........(((((.(((((((((.(((..(((((((.((((.(((((..((((.((...(((..((..((....(((((........)))))..)).
)))))))))))..))))).....))))....))))))).)))..))))))))).)))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q28ZX3|PABP2_DROPS: 0.00002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
