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ABOUT THIS RECORD

ID: MNEST001670
species: Nicotiana tabacum
miRNA family: MIR394
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGTGGGCATACTGCCAACAG

miRNA*
 TTGGCATTCTGTCCACCTCC

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TGGAGATTTCACAAAGGGTTCCTTACAGAGTTCTTTGGCATTCTGTCCACCTCCTCGATCTCCTTTTAGAATGGAAAAAAAAATAATATTTTCTTCGTTTT
AATTTATGTGACGTAGTTTGAAACGATGAGAGTAAAGTGTAAAATTATGGAGGTGGGCATACTGCCAACAGATTTCTGTTGGTTTCTCTTTGCGAAACCC
T

dot-bracket secondary structure
)((...((((.(((((((..((..((((((.(((((((((...(((((((((((..(((.(((.........))).......(((.(((((((.(((((((
((.(((((...))))).))))))))).)))))))...)))...)))..)))))))))))...)))))).))).)))))).))...))))))).)))).))
.


SIMILARITIES
miRBase ptc-MIR394a: 7.0E-13

PMRD ptc-miRf10096-akr: 4.0E-11

microPC miR394: 4.0E-5		UniProt no hits

RFAM 4MIR394: 5.0E-11		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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