ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR394
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGGCATACTGCCAACAG miRNA* TTGGCATTCTGTCCACCTCC mismatches: 3 bulges: 1 |
pre-miRNA
GGAGATTTCACAAAGGGTTCCTTACAGAGTTCTTTGGCATTCTGTCCACCTCCTCGATCTCCTTTTAGAATGGAAAAAAAAATAATATTTTCTTCGTTTT
AATTTATGTGACGTAGTTTGAAACGATGAGAGTAAAGTGTAAAATTATGGAGGTGGGCATACTGCCAACAGATTTCTGTTGGTTTCTCTTTGCGAAACCC
T
dot-bracket secondary structure
((...((((.(((((((..((..((((((.(((((((((...(((((((((((..(((.(((.........))).......(((.(((((((.(((((((
((.(((((...))))).))))))))).)))))))...)))...)))..)))))))))))...)))))).))).)))))).))...))))))).)))).))
.
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAGATTTCACAAAGGGTTCCTTACAGAGTTCTTTGGCATTCTGTCCACCTCCTCGATCTCCTTTTAGAATGGAAAAAAAAATAATATTTTCTTCGTTTT
AATTTATGTGACGTAGTTTGAAACGATGAGAGTAAAGTGTAAAATTATGGAGGTGGGCATACTGCCAACAGATTTCTGTTGGTTTCTCTTTGCGAAACCC
T
dot-bracket secondary structure
((...((((.(((((((..((..((((((.(((((((((...(((((((((((..(((.(((.........))).......(((.(((((((.(((((((
((.(((((...))))).))))))))).)))))))...)))...)))..)))))))))))...)))))).))).)))))).))...))))))).)))).))
.
SIMILARITIES| miRBase ptc-MIR394a: 0.0000000000007 PMRD ptc-miRf10096-akr: 0.00000000004 microPC miR394: 0.00004 | UniProt no hits RFAM MIR394: 0.00000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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