ABOUT THIS RECORDspecies: Nuphar advena
miRNA family: MIR529
source: miRNEST
Taxonomy by NCBI:
Nuphar advena Nuphar Nymphaeaceae Nymphaeales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAAGAGAGAGAGCACAACAA miRNA* CTTGGCTGATTGCTCTTGCCT mismatches: 3 bulges: 2 |
pre-miRNA
TTCACAGCGATTCTTGGCTGATTGCTCTTGCCTTTTATTTTGGGCTACGATTTGGATTTGATAAAAATGATAGAACGAGGCTGTTTAACATGATCAATGG
TCTTCCATCTATTTATGAGGTAGTTTCTGGCAAAAAGGAAGCACAAGAAGTATCCAGTGTTACAAATAATGGTAGCAGTAAGAGCAAGAGAGAGAGCACA
ACAAAAGCATCTA
dot-bracket secondary structure
......((..((.((((((..((.(((((((.((((((.(((((.(((..((((.((((.(((((...(((.((...((((((((..........)))))
))))).)))..))))).)))).((((((........)))))).))))..))))))))((((((........))))))))))))))))))).)).))).))
).))..)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCACAGCGATTCTTGGCTGATTGCTCTTGCCTTTTATTTTGGGCTACGATTTGGATTTGATAAAAATGATAGAACGAGGCTGTTTAACATGATCAATGG
TCTTCCATCTATTTATGAGGTAGTTTCTGGCAAAAAGGAAGCACAAGAAGTATCCAGTGTTACAAATAATGGTAGCAGTAAGAGCAAGAGAGAGAGCACA
ACAAAAGCATCTA
dot-bracket secondary structure
......((..((.((((((..((.(((((((.((((((.(((((.(((..((((.((((.(((((...(((.((...((((((((..........)))))
))))).)))..))))).)))).((((((........)))))).))))..))))))))((((((........))))))))))))))))))).)).))).))
).))..)).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O81488|Y5621_ARATH: 2e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
