ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCGTCTCGCGATTTACAAT miRNA* TGTAAACTACGAGATGAATTT mismatches: 5 bulges: 0 |
pre-miRNA
ATAAATCCCGTCTGTAAACTACGAGATGAATTTAATGAGCCTAAGTAATCCATCATTAAAGCATGTTTACTGTGGCACTACTGTAGCAATTTTGTGTCTA
ATCACGTCCTAATTAGGCACATTAGATTCGTCTCGCGATTTACAATCCATCCGTG
dot-bracket secondary structure
............((((((...((((((((((((((((.((((((..........((((..(((((.....(((.(((....))).)))....))))).))
))..........)))))).))))))))))))))))...))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATAAATCCCGTCTGTAAACTACGAGATGAATTTAATGAGCCTAAGTAATCCATCATTAAAGCATGTTTACTGTGGCACTACTGTAGCAATTTTGTGTCTA
ATCACGTCCTAATTAGGCACATTAGATTCGTCTCGCGATTTACAATCCATCCGTG
dot-bracket secondary structure
............((((((...((((((((((((((((.((((((..........((((..(((((.....(((.(((....))).)))....))))).))
))..........)))))).))))))))))))))))...))))))...........
SIMILARITIES| miRBase osa-MIR442: 0.00000003 PMRD osa-miR442: 0.00000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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