miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST001701
species: Panicum virgatum
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGGAGGGATGCCTTCCTTG

miRNA*
 AAGATCTGCATCTCGCCTGAGC

mismatches: 5
bulges: 1
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pre-miRNA
 GCGAAGATGAGCCGCTGCTGCTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGGCGACGGTGTCGCTGCTGTCGACCTCCAGCGTCA
CCGTCTTCCCGTGGAGGGTCTTCACGAAGATCTGCATCTCGCCTGAGCTCGGGGATTTCTCGCCGA

dot-bracket secondary structure
((((.((....((.(((..((((.((.(((((((..((.((((...((((((.(((..((((((((((((((((......)))))))....)))))))))
..))).(((...)))))))))..)))).))...))))))).)).)))).)))))..)).))))...


SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.0000005

microPC no hits		UniProt sp|P0CH32|UBQ4_ARATH: 6e-16

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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