ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAACGGAGGGAGTACA miRNA* TGCAACCTTCTGTTCAGAAAAC mismatches: 5 bulges: 1 |
pre-miRNA
ATACAATTTGGAACGGAGGGAGTACATCAGTATGTCGATGGTTGAGCTCAAATATATAAGTATCTGAGCTGCCCAGCTGTTGATCATTTACCATGCAACC
TTCTGTTCAGAAAACAT
dot-bracket secondary structure
......(((.((((((((((.(((.......(((((((((((((((((((.((((....)))).))))))...)))))))))).)))......)))..))
)))))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATACAATTTGGAACGGAGGGAGTACATCAGTATGTCGATGGTTGAGCTCAAATATATAAGTATCTGAGCTGCCCAGCTGTTGATCATTTACCATGCAACC
TTCTGTTCAGAAAACAT
dot-bracket secondary structure
......(((.((((((((((.(((.......(((((((((((((((((((.((((....)))).))))))...)))))))))).)))......)))..))
)))))))).))).....
SIMILARITIES| miRBase tae-MIR1137: 0.0004 PMRD tae-miR1137: 0.0004 microPC miR1439: 0.0004 | UniProt no hits RFAM MIR1122: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
